Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015821299.1_cds_XP_016500718.1_14520
CDS Infomation

[gene=LOC107819145] [db_xref=GeneID:107819145] [protein=PAP-specific phosphatase HAL2-like isoform X2] [protein_id=XP_016500718.1] [location=join(49875..50268,52209..52896,53992..54212,54855..54934)] [gbkey=CDS]
Sequence

ATGTCTTATACTTGTACTGCTACTAGTTTTCCAATCAAAGTCCCGCATACTTTATTCCAT
TCTAGGAAGTTTAATGATGTTTTTCCCAAAAACCAAATACTAGGAACTCTCTCCTTCTCT
TCGAAGAAAAATTCTCGCTTTGGTTTTACTAACCAAACCATTTCTCTTTCTCAGTGTTGT
AGTCAAACCAATTTTCTATCTACAATGGATGAAGATTGTAAATTGGAAGTTAGCTCAACT
GATATTCCAGAGGGGTATTGTAAAGAACTGGAAATTGCAGTAAGAGCTGTACATATGGCT
TGCTTGCTTTGTCAGAGAGTTCAAGATAATTTGCTCTCTAAAACCTCTGAACAAGTCCAT
TCTAAGGAAGATAATTCCCCCGTCACAATTGCTGATTGGAGTGTCCAAGCAATTGTCAGC
TGGGTACTATCCGAGGCTTTTGGCAGTGAGAATGTAGCTATTGTTGCTGAAGAAGATGTG
GAAGTTCTTTCGAAGCCTAGCTCGGTTGGCCTGTTAGAAGCAGTAGTGAGAACCGTGAAT
GAGTGTCTAGCAGATGCACCCCGTTTTGGACTGAAAGGTCCTGGTACTGATCTTGATGCT
AAATCTGTTCTTGCGGCCATAAGTCGGTGCAACTTGGCCGGCGCCAGAGGTAGCAAGTTT
TGGGTACTGGATCCTGTTGATGGAACATTGGGTTTTGTACGTGGAGATCAATATGCCATT
GCTTTGGCATTGATAGAAGATGGAGAACCTGTGCTTGGGGTTCTCGGGTGTCCAAATTAC
CCTATGAAGAAGGAATGGCTTAGTTATCAAAATGGTTATCGGAGAATCTTATCTAGGTTG
ACCTCCCAAACATCTGTATCTGGGGATAGAGGTTCTGTACTTTATGCAAGGAAAGGTGGC
GGCAAGGCTTGGATGCAACCATTACTGTATGGAGAAAAGAACTTTGTGTGGCCAAACTCT
GCAAAGCAAATCAAAGTCTCCTCCATAGATAATCCAGCATTGGCTACCTTTTGTGAACCA
GTTGAGATAGCAAATTCAAGCCATTCATTCACAGCAGGACTGGCCCATAGTGTTGGACTT
AGGAACCAGCCATTACGTGTATATAGCATGGTGAAGTATGCAGCCATAGCTCGAGGAGAT
GCTGAGATATTCATGAAATTTGCAAGGGCTGGTTACAAGGAGAAAATATGGGATCATGCA
GCTGGTGTTCTTATCATTGAAGAAGCCGGCGGTGTGGTGACAGATGCAGGAGGGCGGCCG
CTAGACTTCTCCAAAGGCGTATACTTAGAAGGACTTGATCGAGGATTTCGACTCTCATTC
AAATTCAAATTGTACAAAAAGGAAGCAAGTGGTAAAAAACAAATAATAAAGCCAAAGGAA
TGA

Peptide Sequence

PEP ID

XP_016500718.1
PEP Infomation

PREDICTED: PAP-specific phosphatase HAL2-like isoform X2 [Nicotiana tabacum]
Sequence

MSYTCTATSFPIKVPHTLFHSRKFNDVFPKNQILGTLSFSSKKNSRFGFTNQTISLSQCC
SQTNFLSTMDEDCKLEVSSTDIPEGYCKELEIAVRAVHMACLLCQRVQDNLLSKTSEQVH
SKEDNSPVTIADWSVQAIVSWVLSEAFGSENVAIVAEEDVEVLSKPSSVGLLEAVVRTVN
ECLADAPRFGLKGPGTDLDAKSVLAAISRCNLAGARGSKFWVLDPVDGTLGFVRGDQYAI
ALALIEDGEPVLGVLGCPNYPMKKEWLSYQNGYRRILSRLTSQTSVSGDRGSVLYARKGG
GKAWMQPLLYGEKNFVWPNSAKQIKVSSIDNPALATFCEPVEIANSSHSFTAGLAHSVGL
RNQPLRVYSMVKYAAIARGDAEIFMKFARAGYKEKIWDHAAGVLIIEEAGGVVTDAGGRP
LDFSKGVYLEGLDRGFRLSFKFKLYKKEASGKKQIIKPKE

Transcript Sequence

Gene sequence data has not been registered.